Algorithmic Aspects of Bioinformatics (Natural Computing Series) (Hardcover)

Hans-Joachim Böckenhauer (Author), Dirk Bongartz (

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Advances in bioinformatics and systems biology require improved computational methods for analyzing data, while progress in molecular biology is in turn influencing the development of computer science methods. This book introduces some key problems in bioinformatics, discusses the models used to formally describe these problems, and analyzes the algorithmic approaches used to solve them.

After introducing the basics of molecular biology and algorithmics, Part I explains string algorithms and alignments; Part II details the field of physical mapping and DNA sequencing; and Part III examines the application of algorithmics to the analysis of biological data. Exciting application examples include predicting the spatial structure of proteins, and computing haplotypes from genotype data.

This book describes topics in detail and presents formal models in a mathematically precise, yet intuitive manner, with many figures and chapter summaries, detailed derivations, and examples. It is well suited as an introduction into the field of bioinformatics, and will benefit students and lecturers in bioinformatics and algorithmics, while also offering practitioners an update on current research topics.

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描述

生物信息學和系統生物學的進展需要改進的計算方法來分析數據,而分子生物學的進展則影響了計算機科學方法的發展。本書介紹了生物信息學中的一些關鍵問題,討論了用於正式描述這些問題的模型,並分析了用於解決這些問題的算法方法。

在介紹分子生物學和算法基礎之後,第一部分介紹了字符串算法和對齊;第二部分詳細介紹了物理圖譜和DNA序列;第三部分則探討了算法在生物數據分析中的應用。令人興奮的應用示例包括預測蛋白質的空間結構,以及從基因型數據計算單倍型。

本書以詳細的方式描述了這些主題,以數學上精確但直觀的方式呈現了正式模型,並提供了許多圖片和章節摘要、詳細的推導和示例。它非常適合作為生物信息學領域的入門書,將使生物信息學和算法學的學生和講師受益,同時也為從業人員提供了關於當前研究主題的更新。