Bioinformatics with R Cookbook (Paperback)

Paurush Praveen Sinha

  • 出版商: Packt Publishing
  • 出版日期: 2014-06-14
  • 售價: $1,800
  • 貴賓價: 9.5$1,710
  • 語言: 英文
  • 頁數: 300
  • 裝訂: Paperback
  • ISBN: 1783283130
  • ISBN-13: 9781783283132
  • 相關分類: R 語言生物資訊 Bioinformatics
  • 立即出貨 (庫存=1)

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商品描述

Over 90 practical recipes for computational biologists to model and handle real-life data using R

Overview

  • Use the existing R-packages to handle biological data
  • Represent biological data with attractive visualizations
  • An easy-to-follow guide to handle real-life problems in Bioinformatics like Next Generation Sequencing and Microarray Analysis

In Detail

Bioinformatics is an interdisciplinary field that develops and improves upon the methods for storing, retrieving, organizing, and analyzing biological data. R is the primary language used for handling most of the data analysis work done in the domain of bioinformatics.

Bioinformatics with R Cookbook is a hands-on guide that provides you with a number of recipes offering you solutions to all the computational tasks related to bioinformatics in terms of packages and tested codes.

With the help of this book, you will learn how to analyze biological data using R, allowing you to infer new knowledge from your data coming from different types of experiments stretching from microarray to NGS and mass spectrometry.

What you will learn from this book

  • Retrieve biological data from within an R environment without hassling web pages
  • Annotate and enrich your data and convert the identifiers
  • Find relevant text from PubMed on which to perform text mining
  • Find phylogenetic relations between species
  • Infer relations between genomic content and diseases via GWAS
  • Classify patients based on biological or clinical features
  • Represent biological data with attractive visualizations, useful for publications and presentations

Approach

This book is an easy-to-follow, stepwise guide to handle real life Bioinformatics problems. Each recipe comes with a detailed explanation to the solution steps. A systematic approach, coupled with lots of illustrations, tips, and tricks will help you as a reader grasp even the trickiest of concepts without difficulty.

Who this book is written for

This book is ideal for computational biologists and bioinformaticians with basic knowledge of R programming, bioinformatics and statistics. If you want to understand various critical concepts needed to develop your computational models in Bioinformatics, then this book is for you. Basic knowledge of R is expected.

商品描述(中文翻譯)

超過90個實用的食譜,供計算生物學家使用R模擬和處理真實數據。

概述:
- 使用現有的R套件處理生物數據
- 以吸引人的視覺化方式呈現生物數據
- 一個易於遵循的指南,處理生物信息學中的真實問題,如下一代测序和微陣列分析

詳細內容:
生物信息學是一個跨學科領域,開發和改進存儲、檢索、組織和分析生物數據的方法。R是在生物信息學領域中處理大部分數據分析工作的主要語言。

《R生物信息學食譜》是一本實用指南,提供了許多食譜,為您提供與生物信息學相關的所有計算任務的解決方案,包括套件和經過測試的代碼。

通過這本書的幫助,您將學習如何使用R分析生物數據,從不同類型的實驗中推斷出新的知識,從微陣列到NGS和質譜術。

本書的學習重點:
- 在R環境中檢索生物數據,無需瀏覽網頁
- 注釋和豐富您的數據,並轉換標識符
- 從PubMed中找到相關文本進行文本挖掘
- 找到物種之間的親緣關係
- 通過GWAS推斷基因組內容和疾病之間的關係
- 基於生物或臨床特徵對患者進行分類
- 以吸引人的視覺化方式呈現生物數據,有助於出版和演示

這本書的特點:
- 這本書是一本易於遵循的、逐步指南,處理真實生活中的生物信息學問題。每個食譜都附有詳細的解決步驟說明。系統性的方法,加上大量的插圖、技巧和訣竅,將幫助您作為讀者毫不費力地掌握最棘手的概念。

這本書適合對R編程、生物信息學和統計學有基本知識的計算生物學家和生物信息學家。如果您想了解開發生物信息學計算模型所需的各種關鍵概念,那麼這本書適合您。預期讀者具備基本的R知識。